package start;

import io.BlastClustReader;
import io.FastaReader;
import io.ISequenceReader;

import java.io.File;
import java.io.IOException;
import java.util.Map;
import java.util.TreeMap;

import dataTypes.ISequenceData;

public class TempMain {

	/**
	 * @param args
	 * @throws IOException
	 */
	public static void main(String[] args) throws IOException {
//		Map<String, ISequenceData> sequenceData = new TreeMap<String, ISequenceData>();
//		ISequenceReader pyroDataIn = new FastaReader(new File(
//				"2.CAT.454Reads.fna"), new File("2.CAT.454Reads.qual"));
//
//		ISequenceData temp = pyroDataIn.loadNext();
//
//		while (temp != null) {
//			sequenceData.put(temp.getSeqName(), temp);
//			temp = pyroDataIn.loadNext();
//		}
//		System.out.println(sequenceData.keySet());
//		System.out.println(sequenceData.size());
//
//		System.out.println(pyroDataIn.readAllNames().size());
//
//		System.out.print(pyroDataIn.loadSequence("F5BXKTZ02JZUUP"));
//		
		BlastClustReader.readAll(new File("/home/christian/cluster"));

	}

}
